That's right. It's what happens to different types of calories. If you have fructose as part of whole foods, that's OK (so long as you don't OD on fruit etc) but when you start getting into fruit juices and fructose extracted and added to foods, that's a whole different ballgame. You no longer have the fibre, protein and/or fats to help slow down and regulate how the liver has to process it. Plus excess will be stored as fat if your cells don't need it.
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Again fructose added to foods is still fine if it fits into your calories and macros for the day. Just because fructose is refined and added to things doesn't make it automatically bad.